LineShapeKin Simulation Report

results

 


U_R_RL_1

w1 < w2 < w3  < w4:  This site experiences both binding and isomerization changes

Equilibrium molar fractions of species


Other graphic formats: EPS, MATLAB Figure

Points correspond to steps in titration series corresponding to actual Rtotal and LRratio. Curves are smooth curves at constant Rtotal. Populations of multimeric species are shown per oligomer. Population of free ligand is normalized to total receptor concentration.

Isothermal Titration Calorimetry profile


Other graphic formats: EPS, MATLAB Figure

Heat uptake curve is simulated as a derivative of the populations.

U_R_RL_1
w1 < w2 < w3  < w4:  This site experiences both binding and isomerization changes

Equilibrium constants:
Ka(A1)=1.00e+06
Ka(B1)=2.00e+00
Ka(B2)=2.00e+00
Ka(A2)=1.00e+06 (dependent)

Rate constants (1-forward, 2-reverse):
k1(A1)=5.00e+08
k2(A1)=5.00e+02
k1(A2)=5.00e+08
k2(A2)=5.00e+02
k1(B1)=1.00e+03
k2(B1)=5.00e+02
k1(B2)=1.00e-02
k2(B2)=5.00e-03

Chemical shifts:
w0(R)=0.0 /s (0.0 Hz)
w0(R*)=100.0 /s (15.9 Hz)
w0(RL)=200.0 /s (31.8 Hz)
w0(R*L)=300.0 /s (47.8 Hz)

Base relaxation rates:
R2(R)=10.0 /s
R2(R*)=10.0 /s
R2(RL)=10.0 /s
R2(R*L)=10.0 /s

Enthalpy difference from the base state:
dH(R)=0.0
dH(R*)=-1.0
dH(RL)=-2.0
dH(R*L)=-3.0

Total R concentration (*1000):
0.50 0.50 0.50 0.50 0.50 0.50 0.50 0.50 0.50 0.50 0.50 0.50 0.50 0.50 0.50

Ratio of total L to total R:
0.00 0.10 0.20 0.30 0.40 0.50 0.60 0.70 0.80 0.90 0.95 1.00 1.05 1.10 1.20

1D-spectra of the titration series


Other graphic formats: EPS, MATLAB Figure

Traces (bottom to top) correspond to L/R ratios indicated by points in the Populations graph (above). Red dots indicate peak maxima for a visual aid (also plotted as the chemical shift titration curves, right). Dashed lines indicate chemical shifts of individual species.

Chemical shift titration curves


Other graphic formats: EPS, MATLAB Figure

Points correspond to positions of peak maxima numerically detected in the spectral traces. Sometimes not all peaks will be detected. Signal/noise is not considered.

 

LineShapeKin Simulation
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